Detailed information of SNP:
|
SNP ID:
sf1104983449(Gbrowse)
Chromosome: chr11 Position: 4983449 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 60.58% | 39.42% |
| All Indica | 795 | 39.25% | 60.75% |
| All Japonica | 495 | 91.52% | 8.48% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 207 | 37.20% | 62.80% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104983449 | C->T | LOC_Os11g09300(LOC_Os11g09300.1) | INTRON |