Detailed information of SNP:
|
SNP ID:
sf1104983609(Gbrowse)
Chromosome: chr11 Position: 4983609 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 60.73% | 39.27% |
| All Indica | 785 | 42.29% | 57.71% |
| All Japonica | 492 | 86.99% | 13.01% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 370 | 63.24% | 36.76% |
| Indica II | 208 | 9.13% | 90.87% |
| Indica Intermediate | 207 | 38.16% | 61.84% |
| Temperate Japonica | 332 | 89.16% | 10.84% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104983609 | T->C | LOC_Os11g09300(LOC_Os11g09300.1) | Non-Synonymous SNP |