Detailed information of SNP:
|
SNP ID:
sf1104984421(Gbrowse)
Chromosome: chr11 Position: 4984421 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 61.77% | 38.23% |
| All Indica | 795 | 39.75% | 60.25% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 372 | 58.33% | 41.67% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104984421 | A->G | INTERGENIC | None |