Detailed information of SNP:
|
SNP ID:
sf1104986660(Gbrowse)
Chromosome: chr11 Position: 4986660 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.45% | 40.55% |
| All Indica | 798 | 36.59% | 63.41% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 55.08% | 44.92% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104986660 | A->G | INTERGENIC | None |