Detailed information of SNP:
|
SNP ID:
sf1105071998(Gbrowse)
Chromosome: chr11 Position: 5071998 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.86% | 37.14% |
| All Indica | 799 | 72.34% | 27.66% |
| All Japonica | 497 | 55.94% | 44.06% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 52.84% | 47.16% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105071998 | A->C | INTERGENIC | None |