Detailed information of SNP:
|
SNP ID:
sf1105097086(Gbrowse)
Chromosome: chr11 Position: 5097086 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 90.54% | 9.46% |
| All Indica | 784 | 98.34% | 1.66% |
| All Japonica | 425 | 74.12% | 25.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 199 | 95.98% | 4.02% |
| Temperate Japonica | 277 | 74.73% | 25.27% |
| Tropical Japonica | 84 | 67.86% | 32.14% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105097086 | T->G | INTERGENIC | None |