Detailed information of SNP:
|
SNP ID:
sf1105099488(Gbrowse)
Chromosome: chr11 Position: 5099488 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 88.56% | 11.44% |
| All Indica | 790 | 96.20% | 3.80% |
| All Japonica | 433 | 72.06% | 27.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 291 | 71.13% | 28.87% |
| Tropical Japonica | 76 | 67.11% | 32.89% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105099488 | A->T | INTERGENIC | None |