Detailed information of SNP:
|
SNP ID:
sf1105123972(Gbrowse)
Chromosome: chr11 Position: 5123972 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 58.56% | 41.44% |
| All Indica | 784 | 32.27% | 67.73% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 370 | 44.86% | 55.14% |
| Indica II | 211 | 10.90% | 89.10% |
| Indica Intermediate | 203 | 31.53% | 68.47% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105123972 | G->A | INTERGENIC | None |