Detailed information of SNP:
|
SNP ID:
sf1105125023(Gbrowse)
Chromosome: chr11 Position: 5125023 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 76.33% | 23.67% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 496 | 44.76% | 55.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 44.18% | 55.82% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105125023 | A->G | INTERGENIC | None |