Detailed information of SNP:
|
SNP ID:
sf1105152805(Gbrowse)
Chromosome: chr11 Position: 5152805 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1270 | 87.64% | 12.36% |
| All Indica | 655 | 81.53% | 18.47% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 287 | 86.76% | 13.24% |
| Indica II | 191 | 73.82% | 26.18% |
| Indica Intermediate | 177 | 81.36% | 18.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105152805 | T->C | INTERGENIC | None |