Detailed information of SNP:
|
SNP ID:
sf1105158359(Gbrowse)
Chromosome: chr11 Position: 5158359 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 94.74% | 5.26% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 451 | 85.37% | 14.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 303 | 96.37% | 3.63% |
| Tropical Japonica | 81 | 41.98% | 58.02% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105158359 | T->A | INTERGENIC | None |