Detailed information of SNP:
|
SNP ID:
sf1105177502(Gbrowse)
Chromosome: chr11 Position: 5177502 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 79.83% | 20.17% |
| All Indica | 776 | 81.83% | 18.17% |
| All Japonica | 494 | 74.09% | 25.91% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 360 | 77.78% | 22.22% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 332 | 70.48% | 29.52% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105177502 | G->T | INTERGENIC | None |