Detailed information of SNP:
|
SNP ID:
sf1105185191(Gbrowse)
Chromosome: chr11 Position: 5185191 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 79.77% | 20.23% |
| All Indica | 770 | 83.12% | 16.88% |
| All Japonica | 496 | 70.77% | 29.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 81.27% | 18.73% |
| Indica II | 203 | 83.74% | 16.26% |
| Indica Intermediate | 204 | 85.78% | 14.22% |
| Temperate Japonica | 334 | 69.46% | 30.54% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105185191 | T->C | INTERGENIC | None |