Detailed information of SNP:
|
SNP ID:
sf1105195009(Gbrowse)
Chromosome: chr11 Position: 5195009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 66.48% | 33.52% |
| All Indica | 786 | 42.75% | 57.25% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 364 | 48.08% | 51.92% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105195009 | G->A | LOC_Os11g09740(LOC_Os11g09740.1) | INTRON |