Detailed information of SNP:
|
SNP ID:
sf1105253415(Gbrowse)
Chromosome: chr11 Position: 5253415 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 87.85% | 12.15% |
| All Indica | 790 | 96.33% | 3.67% |
| All Japonica | 496 | 72.38% | 27.62% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 334 | 70.96% | 29.04% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105253415 | A->G | INTERGENIC | None |