Detailed information of SNP:
|
SNP ID:
sf1105264870(Gbrowse)
Chromosome: chr11 Position: 5264870 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 83.19% | 16.81% |
| All Indica | 757 | 70.41% | 29.59% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 56 | 94.64% | 5.36% |
| Indica I | 359 | 79.39% | 20.61% |
| Indica II | 198 | 50.51% | 49.49% |
| Indica Intermediate | 200 | 74.00% | 26.00% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105264870 | C->T | INTERGENIC | None |