Detailed information of SNP:
|
SNP ID:
sf1105265719(Gbrowse)
Chromosome: chr11 Position: 5265719 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 95.61% | 4.39% |
| All Indica | 772 | 94.30% | 5.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 198 | 96.46% | 3.54% |
| Indica Intermediate | 203 | 90.15% | 9.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105265719 | G->A | INTERGENIC | None |