Detailed information of SNP:
|
SNP ID:
sf1105277066(Gbrowse)
Chromosome: chr11 Position: 5277066 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 72.48% | 27.52% |
| All Indica | 791 | 92.04% | 7.96% |
| All Japonica | 496 | 36.90% | 63.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105277066 | G->A | INTERGENIC | None |