Detailed information of SNP:
|
SNP ID:
sf1105279662(Gbrowse)
Chromosome: chr11 Position: 5279662 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 70.82% | 29.18% |
| All Indica | 790 | 90.38% | 9.62% |
| All Japonica | 493 | 34.89% | 65.11% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 206 | 79.13% | 20.87% |
| Temperate Japonica | 331 | 33.23% | 66.77% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105279662 | G->C | LOC_Os11g09864(LOC_Os11g09864.1) | UTR_3_PRIME |
| sf1105279662 | G->C | LOC_Os11g09864(LOC_Os11g09864.2) | INTRON |