Detailed information of SNP:
|
SNP ID:
sf1105282581(Gbrowse)
Chromosome: chr11 Position: 5282581 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 72.39% | 27.61% |
| All Indica | 794 | 92.19% | 7.81% |
| All Japonica | 492 | 35.77% | 64.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 330 | 33.94% | 66.06% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105282581 | C->T | INTERGENIC | None |