Detailed information of SNP:
|
SNP ID:
sf1105307601(Gbrowse)
Chromosome: chr11 Position: 5307601 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 86.30% | 13.70% |
| All Indica | 791 | 99.62% | 0.38% |
| All Japonica | 468 | 61.54% | 38.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 317 | 64.04% | 35.96% |
| Tropical Japonica | 88 | 40.91% | 59.09% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105307601 | G->C | LOC_Os11g09919(LOC_Os11g09919.1) | Non-Synonymous SNP |