Detailed information of SNP:
|
SNP ID:
sf1105330721(Gbrowse)
Chromosome: chr11 Position: 5330721 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 52.22% | 47.78% |
| All Indica | 799 | 25.91% | 74.09% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 34.93% | 65.07% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105330721 | T->G | INTERGENIC | None |