Detailed information of SNP:
|
SNP ID:
sf1105343216(Gbrowse)
Chromosome: chr11 Position: 5343216 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 86.68% | 13.32% |
| All Indica | 793 | 97.48% | 2.52% |
| All Japonica | 466 | 65.67% | 34.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 312 | 62.82% | 37.18% |
| Tropical Japonica | 89 | 66.29% | 33.71% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105343216 | A->T | INTERGENIC | None |