Detailed information of SNP:
|
SNP ID:
sf1105360686(Gbrowse)
Chromosome: chr11 Position: 5360686 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.75% | 8.25% |
| All Indica | 798 | 87.22% | 12.78% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 81.82% | 18.18% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105360686 | C->T | LOC_Os11g10000(LOC_Os11g10000.1) | UTR_5_PRIME |