Detailed information of SNP:
|
SNP ID:
sf1105373477(Gbrowse)
Chromosome: chr11 Position: 5373477 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1267 | 66.22% | 33.78% |
| All Indica | 656 | 39.79% | 60.21% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 23.47% | 76.53% |
| Indica II | 89 | 55.06% | 44.94% |
| Indica Intermediate | 192 | 64.58% | 35.42% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 77.78% | 22.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105373477 | G->T | INTERGENIC | None |