Detailed information of SNP:
|
SNP ID:
sf1105373582(Gbrowse)
Chromosome: chr11 Position: 5373582 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1250 | 97.60% | 2.40% |
| All Indica | 662 | 95.62% | 4.38% |
| All Japonica | 471 | 99.79% | 0.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 97 | 96.91% | 3.09% |
| Indica Intermediate | 192 | 89.58% | 10.42% |
| Temperate Japonica | 315 | 99.68% | 0.32% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105373582 | A->G | INTERGENIC | None |