Detailed information of SNP:
|
SNP ID:
sf1105399584(Gbrowse)
Chromosome: chr11 Position: 5399584 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 94.28% | 5.72% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 493 | 90.06% | 9.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 333 | 94.29% | 5.71% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105399584 | C->T | LOC_Os11g10060(LOC_Os11g10060.1) | INTRON |