Detailed information of SNP:
|
SNP ID:
sf1105407268(Gbrowse)
Chromosome: chr11 Position: 5407268 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.52% | 29.48% |
| All Indica | 798 | 57.64% | 42.36% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 48.27% | 51.73% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105407268 | C->T | INTERGENIC | None |