Detailed information of SNP:
|
SNP ID:
sf1105425948(Gbrowse)
Chromosome: chr11 Position: 5425948 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1265 | 97.47% | 2.53% |
| All Indica | 648 | 95.37% | 4.63% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 280 | 91.79% | 8.21% |
| Indica II | 181 | 98.90% | 1.10% |
| Indica Intermediate | 187 | 97.33% | 2.67% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105425948 | T->A | INTERGENIC | None |