Detailed information of SNP:
|
SNP ID:
sf1105427327(Gbrowse)
Chromosome: chr11 Position: 5427327 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 66.93% | 33.07% |
| All Indica | 799 | 50.44% | 49.56% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 46.93% | 53.07% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105427327 | G->C | INTERGENIC | None |