Detailed information of SNP:
|
SNP ID:
sf1105428197(Gbrowse)
Chromosome: chr11 Position: 5428197 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 90.00% | 10.00% |
| All Indica | 790 | 83.42% | 16.58% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 84.28% | 15.72% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 208 | 73.08% | 26.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105428197 | C->A | INTERGENIC | None |