Detailed information of SNP:
|
SNP ID:
sf1105444502(Gbrowse)
Chromosome: chr11 Position: 5444502 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 64.18% | 35.82% |
| All Indica | 704 | 47.30% | 52.70% |
| All Japonica | 494 | 95.34% | 4.66% |
| Aus | 65 | 4.62% | 95.38% |
| Indica I | 342 | 40.94% | 59.06% |
| Indica II | 175 | 70.86% | 29.14% |
| Indica Intermediate | 187 | 36.90% | 63.10% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105444502 | C->T | INTERGENIC | None |