Detailed information of SNP:
|
SNP ID:
sf1105448816(Gbrowse)
Chromosome: chr11 Position: 5448816 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.77% | 36.23% |
| All Indica | 796 | 40.95% | 59.05% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 53.60% | 46.40% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 208 | 48.08% | 51.92% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105448816 | C->T | INTERGENIC | None |