Detailed information of SNP:
|
SNP ID:
sf1105455537(Gbrowse)
Chromosome: chr11 Position: 5455537 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.03% | 25.97% |
| All Indica | 798 | 62.41% | 37.59% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 48.40% | 51.60% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105455537 | C->T | INTERGENIC | None |