Detailed information of SNP:
|
SNP ID:
sf1105522374(Gbrowse)
Chromosome: chr11 Position: 5522374 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.86% | 47.14% |
| All Indica | 799 | 81.73% | 18.27% |
| All Japonica | 496 | 11.09% | 88.91% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 65.60% | 34.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 9.28% | 90.72% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105522374 | A->G | INTERGENIC | None |