Detailed information of SNP:
|
SNP ID:
sf1105532122(Gbrowse)
Chromosome: chr11 Position: 5532122 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 97.39% | 2.61% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105532122 | A->G | INTERGENIC | None |