Detailed information of SNP:
|
SNP ID:
sf1105538679(Gbrowse)
Chromosome: chr11 Position: 5538679 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.98% | 26.02% |
| All Indica | 798 | 55.89% | 44.11% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 61.07% | 38.93% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105538679 | G->A | INTERGENIC | None |