Detailed information of SNP:
|
SNP ID:
sf1105540415(Gbrowse)
Chromosome: chr11 Position: 5540415 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.50% | 47.50% |
| All Indica | 799 | 27.78% | 72.22% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 25.87% | 74.13% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105540415 | G->A | INTERGENIC | None |