Detailed information of SNP:
|
SNP ID:
sf1105571077(Gbrowse)
Chromosome: chr11 Position: 5571077 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1251 | 90.33% | 9.67% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 334 | 64.37% | 35.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 221 | 50.23% | 49.77% |
| Tropical Japonica | 57 | 98.25% | 1.75% |
| Japonica Intermediate | 56 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105571077 | T->A | LOC_Os11g10260(LOC_Os11g10260.1) | INTRON |