Detailed information of SNP:
|
SNP ID:
sf1105583668(Gbrowse)
Chromosome: chr11 Position: 5583668 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.64% | 36.36% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105583668 | T->C | LOC_Os11g10290(LOC_Os11g10290.1) | Non-Synonymous SNP |