Detailed information of SNP:
|
SNP ID:
sf1105588461(Gbrowse)
Chromosome: chr11 Position: 5588461 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.94% | 43.06% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105588461 | T->A | LOC_Os11g10310(LOC_Os11g10310.1) | UTR_3_PRIME |