Detailed information of SNP:
|
SNP ID:
sf1105595697(Gbrowse)
Chromosome: chr11 Position: 5595697 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 87.65% | 12.35% |
| All Indica | 791 | 85.21% | 14.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 368 | 70.38% | 29.62% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105595697 | A->G | LOC_Os11g10310(LOC_Os11g10310.1) | INTRON |