Detailed information of SNP:
|
SNP ID:
sf1105597558(Gbrowse)
Chromosome: chr11 Position: 5597558 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 83.33% | 16.67% |
| All Indica | 797 | 79.42% | 20.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 374 | 65.24% | 34.76% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105597558 | A->G | LOC_Os11g10310(LOC_Os11g10310.1) | Non-Synonymous SNP |