Detailed information of SNP:
|
SNP ID:
sf1105600095(Gbrowse)
Chromosome: chr11 Position: 5600095 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 76.35% | 23.65% |
| All Indica | 799 | 61.45% | 38.55% |
| All Japonica | 490 | 96.53% | 3.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 328 | 97.56% | 2.44% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105600095 | C->T | INTERGENIC | None |