Detailed information of SNP:
|
SNP ID:
sf1105600700(Gbrowse)
Chromosome: chr11 Position: 5600700 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 53.34% | 46.66% |
| All Indica | 778 | 82.13% | 17.87% |
| All Japonica | 495 | 3.64% | 96.36% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 356 | 81.74% | 18.26% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 71.29% | 28.71% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105600700 | G->A | INTERGENIC | None |