Detailed information of SNP:
|
SNP ID:
sf1105601100(Gbrowse)
Chromosome: chr11 Position: 5601100 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.06% | 38.94% |
| All Indica | 797 | 42.91% | 57.09% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 62.30% | 37.70% |
| Indica II | 212 | 12.74% | 87.26% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105601100 | C->T | LOC_Os11g10320(LOC_Os11g10320.1) | UTR_5_PRIME |