Detailed information of SNP:
|
SNP ID:
sf1105605033(Gbrowse)
Chromosome: chr11 Position: 5605033 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 62.51% | 37.49% |
| All Indica | 795 | 95.72% | 4.28% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105605033 | A->C | INTERGENIC | None |