Detailed information of SNP:
|
SNP ID:
sf1105640449(Gbrowse)
Chromosome: chr11 Position: 5640449 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 67.16% | 32.84% |
| All Indica | 791 | 99.62% | 0.38% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 204 | 99.51% | 0.49% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105640449 | T->G | INTERGENIC | None |