Detailed information of SNP:
|
SNP ID:
sf1105664324(Gbrowse)
Chromosome: chr11 Position: 5664324 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.38% | 38.62% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105664324 | T->C | INTERGENIC | None |