Detailed information of SNP:
|
SNP ID:
sf1105666453(Gbrowse)
Chromosome: chr11 Position: 5666453 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.37% | 34.63% |
| All Indica | 798 | 41.85% | 58.15% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 54.01% | 45.99% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105666453 | C->T | INTERGENIC | None |